Survey of endoscopes reprocessing and evaluation of outcomes using bacteriologic cultures for optimization of strategies
DOI:
https://doi.org/10.61529/idjp.v35i2.531Abstract
Background: Flexible endoscopes are complex equipment that are expensive and reuse deems necessary thorough reprocessing composed of several important steps. This study aims to look into the practices used for endoscope reprocessing at a tertiary care unit and help evaluate outcomes using bacteriologic cultures at the end of High-level disinfection (HLD).
Material and Methods: The study was conducted at the endoscopy suite of Indus Hospital & Healthcare Network Karachi which is a tertiary care unit from November 2025 till February 2026. It was a hospital based cross sectional study with an embedded clinical audit component of the current endoscopic reprocessing practices using CDC Audit tool. Sixty-two endoscopes including bronchoscopes, endoscopes, colonoscopes and duodenoscopes were cultured for bacteriologic and Acid-fast bacillus (AFB) growth after HLD to serve as a measure of efficacy of disinfection.
Results: We found bacterial growth in 14 out of 62 endoscopes rendering a culture positivity rate of 23%. The highest proportion of contamination was found in colonoscopes amongst all endoscopes. Total 17 bacterial pathogens were isolated, 8 were identified as Pseudomonas species. About 74% samples were collected 12-18hrs after disinfection The mean time duration between sample collection and sample processing was 2.85 hrs.
Conclusion: Current practices displayed suboptimal adherence to recommended protocols for disinfection of endoscopes translating into positive cultures. Strategic steps were taken for formal training of the personnel, provision of recommended infrastructure and proposition of an appropriately bioengineered endoscopy suite to optimize care.
Keywords: Centers for Disease Control and Prevention, U.S., Disinfection, Endoscopes.
References
Visrodia K, Jones D, Jennings M, Conway C, Burgos H, Malani J, et al. Assessment of endoscope reprocessing at World Gastroenterology Organisation training centers using adenosine triphosphate testing. Endosc Int Open. 2024; 12(1): E68–E77. DOI: https://doi.org/10.1055/a-2185-6035
Speth J. Guidelines in Practice: Processing flexible endoscopes. AORN J. 2023; 118: 169-78. DOI: https://doi.org/10.1002/aorn.13982
Rutala WA, Weber DJ. Reprocessing semi critical items: An overview and an update on the shift from high-level disinfection to sterilization for endoscopes. Am J Infect Control. 2023; 51: A96–A106. DOI: https://doi.org/10.1016/j.ajic.2023.01.002
McCafferty CE, Aghajani MJ, Abi-Hanna D, Gosbell IB, Jensen SO. An update on gastrointestinal endoscopy-associated infections and their contributing factors. Ann Clin Microbiol Antimicrob. 2018; 17(1): 36. DOI: https://doi.org/10.1186/s12941-018-0289-2
United States Senate, Committee on Health, Education, Labor and Pensions. Preventable tragedies: superbugs and how ineffective monitoring of medical device safety fails patients [Minority Staff Report]. Washington (DC): US Senate HELP Committee; 2016 Jan 13. 1–124 p. Available from: https://www.help.senate.gov/imo/media/doc/Duod enoscope%20Investigation%20FINAL%20Report.pdf
Okamoto N, Sczaniecka A, Hirano M, Benedict M, Baba S, Horino Y, et al. A prospective, multicenter, clinical study of duodenoscope contamination after reprocessing. Infect Control Hosp Epidemiol. 2022; 43(12): 1901–9. DOI: https://doi.org/10.1017/ice.2021.525
Bajolet O, Ciocan D, Vallet C, de Champs C, Albertini MT, Di Martino P, et al. Gastroscopy-associated transmission of extended-spectrum beta-lactamase-producing Pseudomonas aeruginosa. J Hosp Infect. 2013; 83(4): 341–3.
DOI: https://doi.org/10.1016/j.jhin.2012.10.016
Goyal H, Larsen S, Perisetti A, Larsen NB, Ockert LK, Adamsen S, et al. Gastrointestinal endoscope contamination rates – elevators are not only to blame: A systematic review and meta-analysis. Endosc Int Open. 2022; 10 (6): E840-E853. DOI: https://doi.org/10.1055/a-1795-8883
Ofstead CL, Smart AG, Hurst LL, Lamb LA. Endoscope processing effectiveness: a reality check and call to action for infection preventionists and clinicians. Am J Infect Control. 2025; 53(7): 785–93. DOI: https://doi.org/10.1016/j.ajic.2025.04.003
ANSI. ANSI/AAMI ST91: 2021 Flexible and Semi-rigid Endoscope Processing in Health Care Facilities. Association for the Advancement of Medical Instrumentation. 2021:1190 https://www.hmark.com/wpcontent/uploads/2022/07/ST91-White-Paper-2022-03-10.pdf
Day LW, Muthusamy VR, Collins J, Kushnir VM, Sawhney MS, Thosani NC, Multisociety guideline on reprocessing flexible GI endoscopes and accessories Gastrointest Endosc. 2021; 93:11-33.e6. DOI: https://doi.org/10.1016/j.gie.2020.09.048 s
Society of Gastrointestinal Nurses and Associates (SGNA). Standards of infection prevention in reprocessing flexible gastrointestinal endoscopes; 2023s. available from: https://www.sgna.org/Portals/0/SGNA %20Standards%20of%20infection%20prevention%20in%20reprocessing_FINAL.pdf
Kurtz DL, Morgan MG. Tracing high level disinfection in physician practices to improve safety with single use disposable flexible endoscopes. Am J Infect Control. 2023;51(7 Suppl): S4. DOI: https://doi.org/10.1016/j.ajic.2023.04.129
Tuvo B, Scarpaci M, Cosci T, Ribechini A, Briani S, Luchini G, et al. Adoption of improved reprocessing decreased microbiological non-compliance for bronchoscopes. Int J Environ Res Public Health. 2022; 19(21): 13978.
DOI: https://doi.org/10.3390/ijerph192113978
Larsen S, Russell RV, Ockert LK, Spanos S, Travis HS, Ehlers LH, Mærkedahl A. Rate and impact of duodenoscope contamination: A systematic review and meta-analysis. EClinicalMedicine. 2020; 25: 100451. DOI: https://doi.org/10.1016/j.eclinm.2020.100451
Azimirad M, Alebouyeh M, Alizadeh AH, Sadeghi A, Khodamoradi E, Aghdaei HA, et al. Bioburden and transmission of pathogenic bacteria through elevator channel during endoscopic retrograde cholangiopancreatography: Application of multiple-locus variable-number tandem-repeat analysis for characterization of clonal strains. Expert Rev Med Devices. 2019; 16(5): 413–20.
DOI: https://doi.org/10.1080/17434440.2019.1604215
Mark JA, Underberg K, Kramer RE. Results of duodenoscope culture and quarantine after manufacturer recommended cleaning process. Gastrointest Endosc. 2020; 91(6): 1328–33. DOI: https://doi.org/10.1016/j.gie.2019.12.050
Suleyman G, Shallal A, Ruby A, Chami E, Gubler J, McNamara S, et al. Use of whole genomic sequencing to detect New Delhi metallo β lactamase (NDM) producing Escherichia coli outbreak associated with endoscopic procedures. Infect Control Hosp Epidemiol. 2024; 45(8): 965–72. DOI: https://doi.org/10.1017/ice.2024.36
Yang X, Sawaya A, Li S, et al. Transmission of New Delhi metallo-β-lactamase–producing Klebsiella pneumoniae through a gastrointestinal endoscope without an elevator channel. Clin Infect Dis. 2024. DOI: https://doi.org/10.1017/ice.2024.55.
Food and Drug Administration, Centers for Disease Control and Prevention, American Society for Microbiology. Duodenoscope surveillance sampling and culturing: reducing the risks of infection. Silver Spring (MD): Food and Drug Administration; 2018 Feb 23. 57 p. Available from: https://www.fda.gov/media/111081/download
Casini B, Pan A, Guarini A, Rivara C, Zullo A, Monica F, et al. Multisocieties position paper: microbiological surveillance on flexible endoscopes. Dig Liver Dis. 2021; 53(9): 1105–11. DOI: https://doi.org/10.1016/j.dld.2021.06.016
Kim S, Russell D, Mohamadnejad M, et al. Persistent contamination of duodenoscopes despite reprocessing: A systematic review and meta-analysis. Gastrointest Endosc. 2017; 85(2): 425–34. https://pmc.ncbi.nlm.nih.gov/articles/PMC8326263/
Vos MC, Bruno MJ, Haanappel CP, Voor In ’t Holt AF, de Groot W, Bulkmans AJC, et al. Contaminated duodenoscopes in ERCP: sensitivity of detection and risk of underdetection. J Hosp Infect. 2024; [epub ahead of print]. DOI: 10.1016/j.gie.2024.08.004
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